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Molecular Dynamics Inc namd39 package version 2 14
Namd39 Package Version 2 14, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/version+14+2+package/package+program/pm40865580-75-7-0
Average 86 stars, based on 1 article reviews
namd39 package version 2 14 - by Bioz Stars, 2026-10
86/100 stars

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Article Title: Structural basis for the synergetic neutralization of hepatitis E virus by antibody-antibody interaction.
Article Snippet: Understanding the action mechanism of neutralizing antibodies is critical for combating viral infections.. This study delineated the crystal structure of the triple complex composed of the hepatitis E virus (HEV) E2s protein, nAb 8C11, and 8H3 Fab, elucidating the structural foundation for unidirectional synergistic neutralization against HEV through antibody–antibody interaction.. It also pinpointed the crucial interacting residues within the 8C11 and 8H3 epitopes, as well as the key sites contributing to the synergism on the 8H3 epitope.

Article Title: A coarse-grained model for amorphous and crystalline fatty acids
Article Snippet: All simulations were performed using the molecular dynamics package DL_POLY (version 2.14) in the isothermal-isochoric ( NVT ) and constant stress ( N σ T ) ensembles with a 1 fs time step and the Nosé–Hoover thermostat and barostat for temperature and pressure control as needed.

Article Title: Synthetic polymers as substrates for a DNA-sliding clamp protein.
Article Snippet: Molecular dynamics simulations were performed in the YASARA structure software package, version 14.2.3.

Article Title: Molecular engineering of complexation between RNA and biodegradable cationic gemini surfactants: role of the hydrophobic chain length
Article Snippet: The transfection efficiency of a material into cells is directly related to the success rate of gene therapy.. Synthetic lipid-like molecules, comparable with the components of biological membranes, are used for this purpose due to their high effectiveness and low toxicity.. In gene therapy, cationic gemini surfactants have shown great promise as delivery system components for genetic material due to their favorable physicochemical properties (low toxicity, low critical micelle concentration (CMC), and positive head groups).

Article Title: Integrated cascade biocatalysis of cannabigerolic acid through cyclodextrin-mediated stabilization and prenyltransferase engineering.
Article Snippet: • Cyclodextrin boosts CBGA yield 7.4 × by stabilizing the CBGA product.. • Lycopene biosensor rapidly screens ratelimiting kinases for pathway.. • ATP regeneration system cuts cofactor needs 125-fold for CBGA.

Software:

Article Title: Calcitriol Induces Paraoxonase 1 Expression in HepG2 Cells: Possible Involvement of VDR-Dependent and Alternative Pathways
Article Snippet: Molecular dynamics (MD) simulations of 20 ns were conducted to explore the stability and dynamic behavior of the PON1–calcitriol complex. .. Simulations were performed using the NAnoscale Molecular Dynamics (NAMD) software package version 2.14 ( https://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=NAMD , accessed 18 January 2023) [ ] with the CHARMM36 force field. ..



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